qcmetrics

This is the released version of qcmetrics; for the devel version, see qcmetrics.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

A Framework for Quality Control

Bioconductor version: Release (3.23)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("qcmetrics")):

Laurent Gatto. qcmetrics: A Framework for Quality Control. doi:10.18129/B9.bioc.qcmetrics, R package version 1.50.0, https://bioconductor.org/packages/qcmetrics.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

Index file for the qcmetrics package vignette	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.50.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL-2
Depends	R (>= 3.3)
Imports	Biobase, methods, knitr, tools, xtable, pander, S4Vectors
System Requirements
URL	http://lgatto.github.io/qcmetrics/articles/qcmetrics.html
Bug Reports	https://github.com/lgatto/qcmetrics/issues

Suggests	affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown, markdown
Linking To
Enhances
Depends On Me
Imports Me	MSstatsQC
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qcmetrics_1.50.0.tar.gz
Windows Binary (x86_64)	qcmetrics_1.50.0.zip
macOS Binary (big-sur-x86_64)	qcmetrics_1.50.0.tgz
macOS Binary (sonoma-arm64)	qcmetrics_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qcmetrics
Package Short Url	https://bioconductor.org/packages/qcmetrics/
Package Downloads Report	Download Stats