To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("roar")

In most cases, you don't need to download the package archive at all.

roar

 

   

Identify differential APA usage from RNA-seq alignments

Bioconductor version: Release (3.3)

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("roar")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("roar")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")

 

PDF R Script Identify differential APA usage from RNA-seq alignments
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL-3
Depends R (>= 3.0.1)
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb
LinkingTo
Suggests RNAseqData.HNRNPC.bam.chr14, testthat
SystemRequirements
Enhances
URL https://github.com/vodkatad/roar/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source roar_1.8.0.tar.gz
Windows Binary roar_1.8.0.zip
Mac OS X 10.9 (Mavericks) roar_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/roar/tree/release-3.3
Package Short Url http://bioconductor.org/packages/roar/
Package Downloads Report Download Stats

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