To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("roar")

In most cases, you don't need to download the package archive at all.

roar

Identify differential APA usage from RNA-seq alignments

Bioconductor version: Release (2.14)

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("roar")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("roar")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")

 

PDF R Script Identify differential APA usage from RNA-seq alignments
PDF   Reference Manual
Text   NEWS

Details

biocViews RNASeq, Sequencing, Software, Transcription
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-3
Depends R (>= 3.0.1)
Imports GenomicRanges, GenomicAlignments(>= 0.99.4), methods, rtracklayer, IRanges
Suggests RUnit, BiocGenerics, RNAseqData.HNRNPC.bam.chr14
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source roar_1.0.0.tar.gz
Windows Binary roar_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) roar_1.0.0.tgz
Mac OS X 10.9 (Mavericks) roar_1.0.0.tgz
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