rsbml

R support for SBML, using libsbml

Bioconductor version: Release (2.14)

Links R to libsbml for SBML parsing, validating output, provides an S4 SBML DOM, converts SBML to R graph objects. Optionally links to the SBML ODE Solver Library (SOSLib) for simulating models.

Author: Michael Lawrence <michafla at gene.com>

Maintainer: Michael Lawrence <michafla at gene.com>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rsbml")

Citation (from within R, enter citation("rsbml")):

Documentation

PDF R Script Quick start for rsbml
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, Network, Pathways, Software
Version 2.22.2
In Bioconductor since BioC 2.1 (R-2.6)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.3.2), methods, utils
Imports BiocGenerics, graph, utils
Suggests
System Requirements libsbml (>=3.0.3)
URL http://www.sbml.org
Depends On Me BiGGR
Imports Me
Suggests Me piano, SBMLR

Package Downloads

Package Source rsbml_2.22.2.tar.gz
Windows Binary rsbml_2.22.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rsbml_2.22.2.tgz
Mac OS X 10.9 (Mavericks) rsbml_2.22.2.tgz
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