seqsetvis

DOI: 10.18129/B9.bioc.seqsetvis    

Set Based Visualizations for Next-Gen Sequencing Data

Bioconductor version: Release (3.7)

seqsetvis enables the visualization and analysis of multiple genomic datasets. Although seqsetvis was designed for the comparison of mulitple ChIP-seq datasets, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files or bam pileups).

Author: Joseph R Boyd [aut, cre]

Maintainer: Joseph R Boyd <jrboyd at uvm.edu>

Citation (from within R, enter citation("seqsetvis")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqsetvis")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqsetvis")

 

HTML R Script Overview and Use Cases
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ChIPSeq, Sequencing, Software, Visualization
Version 1.0.2
License MIT + file LICENSE
Depends R (>= 3.5), ggplot2
Imports data.table, eulerr, GenomicRanges, grDevices, grid, IRanges, limma, methods, png, RColorBrewer, Rsamtools, rtracklayer, S4Vectors, stats
LinkingTo
Suggests BiocFileCache, BiocStyle, ChIPpeakAnno, covr, cowplot, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqsetvis_1.0.2.tar.gz
Windows Binary seqsetvis_1.0.2.zip
Mac OS X 10.11 (El Capitan) seqsetvis_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqsetvis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqsetvis
Package Short Url http://bioconductor.org/packages/seqsetvis/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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