To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sevenbridges")

In most cases, you don't need to download the package archive at all.

sevenbridges

DOI: 10.18129/B9.bioc.sevenbridges    

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Bioconductor version: Release (3.5)

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Nan Xiao [aut, cre], Dusan Randjelovic [aut], Emile Young [ctb], Tengfei Yin [aut], Seven Bridges Genomics [cph, fnd]

Maintainer: Nan Xiao <nan.xiao at sevenbridges.com>

Citation (from within R, enter citation("sevenbridges")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sevenbridges")

Documentation

HTML R Script Complete Guide for Seven Bridges API R Client
HTML R Script Creating Your Docker Container and Command Line Interface (with docopt)
HTML R Script Describe and Execute CWL Tools/Workflows in R
HTML R Script Find Data on CGC via Data Exploerer, SPARQL, and Datasets API
HTML R Script IDE Container: RStudio Server, Shiny Server, and More
HTML R Script Master Tutorial: Use R for Cancer Genomics Cloud
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Software, ThirdPartyClient
Version 1.6.4
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License Apache License 2.0 | file LICENSE
Depends methods, utils, stats
Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, liftr, uuid, dplyr, shiny (>= 0.13), miniUI (>= 0.1.1), rstudioapi (>= 0.5)
LinkingTo
Suggests knitr, rmarkdown, testthat, readr, clipr
SystemRequirements
Enhances
URL https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r
BugReports https://github.com/sbg/sevenbridges-r/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sevenbridges_1.6.4.tar.gz
Windows Binary sevenbridges_1.6.4.zip
Mac OS X 10.11 (El Capitan) sevenbridges_1.6.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/sevenbridges
Package Short Url http://bioconductor.org/packages/sevenbridges/
Package Downloads Report Download Stats
Old Source Package for BioC 3.5 Source Archive

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