siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author	Holger Schwender
Maintainer	Holger Schwender

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("siggenes")

Documentation

siggenes Manual	PDF	R Script
siggenesRnews.pdf	PDF	R Script
Reference Manual

Details

biocViews	Statistics , MultipleComparisons , Microarray , GeneExpression , SNP , ExonArray , DifferentialExpression
Depends	methods , multtest , Biobase , splines
Imports
Suggests	affy , annotate , genefilter , KernSmooth , scrime
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	KCsmart
Imports Me	charm
Suggests Me	GeneSelector , XDE , logicFS , oneChannelGUI

Package Downloads

Package source	siggenes_1.22.0.tar.gz
Windows 32-bit binary	siggenes_1.22.0.zip
Windows 64-bit binary	siggenes_1.22.0.zip
MacOS X 10.5 (Leopard) binary	siggenes_1.22.0.tgz
Package Downloads Report	Downloads Stats