To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spikeLI")

In most cases, you don't need to download the package archive at all.

spikeLI

 

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Bioconductor version: Release (3.1)

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

Author: Delphine Baillon, Paul Leclercq <paulleclercq at hotmail.com>, Sarah Ternisien, Thomas Heim, Enrico Carlon <enrico.carlon at fys.kuleuven.be>

Maintainer: Enrico Carlon <enrico.carlon at fys.kuleuven.be>

Citation (from within R, enter citation("spikeLI")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spikeLI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spikeLI")

 

PDF R Script spikeLI
PDF   Reference Manual

Details

biocViews Microarray, QualityControl, Software
Version 2.28.0
In Bioconductor since BioC 1.9 (R-2.4) (9 years)
License GPL-2
Depends
Imports graphics, grDevices, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source spikeLI_2.28.0.tar.gz
Windows Binary spikeLI_2.28.0.zip
Mac OS X 10.6 (Snow Leopard) spikeLI_2.28.0.tgz
Mac OS X 10.9 (Mavericks) spikeLI_2.28.0.tgz
Subversion source (username/password: readonly)
GitHub source https://github.com/Bioconductor-mirror/spikeLI/tree/release-3.1
Package Short Url http://bioconductor.org/packages/spikeLI/
Package Downloads Report Download Stats

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