survcomp

Performance Assessment and Comparison for Survival Analysis

Bioconductor version: Release (2.14)

R package providing functions to assess and to compare the performance of risk prediction (survival) models.

Author: Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>, Catharina Olsen <colsen at ulb.ac.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("survcomp")

To cite this package in a publication, start R and enter:

    citation("survcomp")

Documentation

PDF R Script SurvComp: a package for performance assessment and comparison for survival analysis
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), survival, prodlim
Imports ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid, rmeta
Suggests Hmisc, CPE, clinfun, survJamda, Biobase, xtable
System Requirements
URL http://compbio.dfci.harvard.edu
Depends On Me genefu
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, metaseqR

Package Downloads

Package Source survcomp_1.14.0.tar.gz
Windows Binary survcomp_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) survcomp_1.14.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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