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survcomp

This is the released version of survcomp; for the devel version, see survcomp.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8

Performance Assessment and Comparison for Survival Analysis


Bioconductor version: Release (3.23)

Assessment and Comparison for Performance of Risk Prediction (Survival) Models.

Author: Benjamin Haibe-Kains [aut, cre], Markus Schroeder [aut], Catharina Olsen [aut], Christos Sotiriou [aut], Gianluca Bontempi [aut], John Quackenbush [aut], Samuel Branders [aut], Zhaleh Safikhani [aut]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("survcomp")):

Benjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush, Samuel Branders, Zhaleh Safikhani. survcomp: Performance Assessment and Comparison for Survival Analysis. doi:10.18129/B9.bioc.survcomp, R package version 1.62.0, https://bioconductor.org/packages/survcomp.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("survcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("survcomp")
SurvComp: a package for performance assessment and comparison for survival analysis PDF R Script
Reference ManualPDF

Details

biocViews DifferentialExpression, GeneExpression, Software, Visualization
Version1.62.0
In Bioconductor sinceBioC 2.8 (R-2.13) (15.5 years)
License Artistic-2.0
Depends survival, prodlim, R (>= 3.4)
Imports ipred, SuppDists, KernSmooth, survivalROC, bootstrap, grid, rmeta, stats, graphics
System Requirements
URLhttp://www.pmgenomics.ca/bhklab/
See More
Suggests Hmisc, clinfun, xtable, Biobase, BiocManager
Linking To
Enhances
Depends On Me genefu
Imports Me asuri, bigPLScox, Coxmos, metaseqR2, PDATK, pencal, plsRcox, SIGN
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, E2E, GSgalgoR
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package survcomp_1.62.0.tar.gz
Windows Binary (x86_64) survcomp_1.62.0.zip
macOS Binary (big-sur-x86_64) survcomp_1.62.0.tgz
macOS Binary (sonoma-arm64) survcomp_1.62.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/survcomp
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/survcomp
Package Short Url https://bioconductor.org/packages/survcomp/
Package Downloads ReportDownload Stats