To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("trackViewer")

In most cases, you don't need to download the package archive at all.

trackViewer

light package to plot elegant track layers

Bioconductor version: Release (2.14)

visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.

Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("trackViewer")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("trackViewer")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("trackViewer")

 

PDF R Script trackViewer Vignette
PDF   Reference Manual

Details

biocViews GenomicsSequence, Software, Visualization
Version 1.0.2
In Bioconductor since BioC 2.14 (R-3.1)
License GPL (>= 2)
Depends R (>= 3.1.0), methods, GenomicRanges, grid, gWidgetstcltk
Imports GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, scales
Suggests biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source trackViewer_1.0.2.tar.gz
Windows Binary trackViewer_1.0.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) trackViewer_1.0.2.tgz
Mac OS X 10.9 (Mavericks) trackViewer_1.0.2.tgz
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