vsclust

DOI: 10.18129/B9.bioc.vsclust    

Feature-based variance-sensitive quantitative clustering

Bioconductor version: Release (3.16)

Feature-based variance-sensitive clustering of omics data. Optimizes cluster assignment by taking into account individual feature variance. Includes several modules for statistical testing, clustering and enrichment analysis.

Author: Veit Schwaemmle [aut, cre]

Maintainer: Veit Schwaemmle <veits at bmb.sdu.dk>

Citation (from within R, enter citation("vsclust")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vsclust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vsclust")

 

HTML R Script VSClust on Bioconductor object
HTML R Script VSClust workflow
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Annotation, Clustering, DifferentialExpression, Metabolomics, PrincipalComponent, Proteomics, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License GPL-2
Depends R (>= 4.2.0)
Imports matrixStats, limma, parallel, shiny, qvalue, grDevices, stats, MultiAssayExperiment, graphics
LinkingTo Rcpp
Suggests knitr, yaml, testthat (>= 3.0.0), rmarkdown, BiocStyle, clusterProfiler
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vsclust_1.0.0.tar.gz
Windows Binary vsclust_1.0.0.zip
macOS Binary (x86_64) vsclust_1.0.0.tgz
macOS Binary (arm64) vsclust_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vsclust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vsclust
Package Short Url https://bioconductor.org/packages/vsclust/
Package Downloads Report Download Stats

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