To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

In most cases, you don't need to download the package archive at all.

wateRmelon

Illumina 450 methylation array normalization and metrics

Bioconductor version: Release (2.14)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic

Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>

Citation (from within R, enter citation("wateRmelon")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wateRmelon")

 

PDF R Script Package
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.4.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL-3
Depends R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, IlluminaHumanMethylation450k.db, ROC
Imports
Suggests RPMM
System Requirements
URL
Depends On Me
Imports Me ChAMP
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source wateRmelon_1.4.0.tar.gz
Windows Binary wateRmelon_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) wateRmelon_1.4.0.tgz
Mac OS X 10.9 (Mavericks) wateRmelon_1.4.0.tgz
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