To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("LiebermanAidenHiC2009")

In most cases, you don't need to download the package archive at all.

LiebermanAidenHiC2009

 

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

Bioconductor version: Release (3.1)

This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776

Author: Wolfgang Huber, Felix Klein

Maintainer: Felix Klein <fklein at embl.de>

Citation (from within R, enter citation("LiebermanAidenHiC2009")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("LiebermanAidenHiC2009")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LiebermanAidenHiC2009")

 

PDF Exploration of HiC data
PDF   Reference Manual

Details

biocViews ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData
Version 0.6.0
License LGPL
Depends KernSmooth, IRanges
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source LiebermanAidenHiC2009_0.6.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/LiebermanAidenHiC2009/
Package Downloads Report Download Stats

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