RNAseqData.HNRNPC.bam.chr14

DOI: 10.18129/B9.bioc.RNAseqData.HNRNPC.bam.chr14    

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (3.8)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RNAseqData.HNRNPC.bam.chr14", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.20.0
License LGPL
Depends
Imports
LinkingTo
Suggests GenomicAlignments, BiocManager
SystemRequirements
Enhances
URL http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me samExploreR, sequencing
Imports Me
Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAseqData.HNRNPC.bam.chr14_0.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report Download Stats

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