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RTCGA.miRNASeq

This is the released version of RTCGA.miRNASeq; for the devel version, see RTCGA.miRNASeq.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

miRNASeq datasets from The Cancer Genome Atlas Project


Bioconductor version: Release (3.23)

Package provides miRNASeq datasets from The Cancer Genome Atlas Project for all available cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/miRNASeq#miRNASeq-DataOverview Data from 2015-11-01 snapshot.

Author: Witold Chodor <witoldchodor at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.miRNASeq")):

Witold Chodor. RTCGA.miRNASeq: miRNASeq datasets from The Cancer Genome Atlas Project. doi:10.18129/B9.bioc.RTCGA.miRNASeq, R package version 1.40.0, https://bioconductor.org/packages/RTCGA.miRNASeq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCGA.miRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.miRNASeq")
Using RTCGA to download miRNASeq data as included in RTCGA.miRNASeq HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews AnnotationData, ExperimentData
Version1.40.0
In Bioconductor sinceBioC 3.3 (R-3.3) (10.5 years)
License GPL-2
Depends R (>= 3.3.0), RTCGA
Imports
System Requirements
URL
Bug Reportshttps://github.com/RTCGA/RTCGA/issues
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me RTCGA
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.miRNASeq_1.40.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/RTCGA.miRNASeq
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/RTCGA.miRNASeq
Package Short Url https://bioconductor.org/packages/RTCGA.miRNASeq/
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