octad.db

DOI: 10.18129/B9.bioc.octad.db    

Open Cancer TherApeutic Discovery (OCTAD) database

Bioconductor version: Release (3.16)

Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.

Author: E. Chekalin [aut, cre], S. Paithankar [aut], B. Zeng [aut], B. Glicksberg [ctb], P. Newbury [ctb], J. Xing [ctb], K. Liu [ctb], A. Wen [ctb], D. Joseph [ctb], B. Chen [aut]

Maintainer: E. Chekalin <eygen.chekalin at gmail.com>

Citation (from within R, enter citation("octad.db")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("octad.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("octad.db")

 

HTML R Script octad.db
PDF   Reference Manual
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Details

biocViews CancerData, ExperimentData, ExperimentHub, ExpressionData, SequencingData
Version 1.0.0
License Artistic-2.0
Depends R (>= 4.2.0), ExperimentHub
Imports
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me octad
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package octad.db_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/octad.db
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/octad.db
Package Short Url https://bioconductor.org/packages/octad.db/
Package Downloads Report Download Stats

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