tximportData

DOI: 10.18129/B9.bioc.tximportData    

tximportData

Bioconductor version: Release (3.7)

This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. For details on version numbers, sample information, and details on calls, see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("tximportData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("tximportData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tximportData")

 

HTML R Script Sample output files for tximport
PDF   Reference Manual

Details

biocViews ExperimentData, RNASeqData, SequencingData
Version 1.8.0
License GPL (>= 2)
Depends
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DESeq2, tximport, variancePartition
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tximportData_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/tximportData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tximportData
Package Short Url http://bioconductor.org/packages/tximportData/
Package Downloads Report Download Stats

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