Workflow Package: RNAseq123

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

Bioconductor version: Release (3.7)

R package that supports the F1000Research workflow article on RNA-seq analysis using limma, Glimma and edgeR by Law et al. (2016).

Author: Charity Law, Monther Alhamdoosh, Shian Su, Gordon Smyth and Matthew Ritchie

Maintainer: Matthew Ritchie <mritchie at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseq123")

Documentation

HTML R Script RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

Details

biocViews GeneExpressionWorkflow, Workflow
Version 1.2.0
License Artistic-2.0
Depends R (>= 3.3.0), Glimma(>= 1.1.9), limma, edgeR, Mus.musculus
Imports
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL http://f1000research.com/articles/5-1408/
Depends On Me
Imports Me
Suggests Me

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