Afternoon Practicals

Differential expression analysis of microarray experiments

 

Analysis of Illumina Data: The lumi package and the nuID naming scheme for oligonucleotides

 

Efficient manipulation of large biological sequences with the Biostrings package

 

Gaggle: broadcast data from R to interactive programs & websites

 

Distributed R and Bioconductor for the Web

 

Analysing Illumina bead-based data using beadarray

 

Flow Cytometry Analysis with R: the flowCore package

 

Integrating Bioconductor Packages in the Analysis of Affymetrix Data

 

Microarray data quality metrics

 

Analysis of small to very large Affymetrix data sets

 

Database mining with biomaRt

 

Analysis of Affymetrix and Nimblegen data and extension of BioConductor tools using the oligo package

 

Machine learning for high-throughput biology

 

Image processing and analysis with EBImage (applied to cytomicroscopy)

 

Exposing Bioconductor functionality as web services