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Recent Commits

Last 10 commit to Bioconductor release:

Rsamtools2025-09-02 17:47:55 -0700
gemma.R2025-09-02 15:53:55 -0700
DMRcate2025-08-31 17:15:47 +1000
OmnipathR2025-08-30 11:55:56 +0200
SeqArray2025-08-29 23:20:49 -0500
EnrichmentBrowser2025-08-28 15:58:59 -0400
immunotation2025-08-27 16:11:48 +0200
openCyto2025-08-25 17:07:28 -0700
MSstatsPTM2025-08-25 16:16:34 -0400
BiocFileCache2025-08-25 08:44:02 -0400

Last 10 commit to Bioconductor devel:

Rsubread2025-09-04 12:29:06 +1000
ChIPanalyser2025-09-03 11:37:38 -0700
spARI2025-09-04 02:15:31 +0800
BgeeDB2025-09-03 17:46:46 +0200
GEOquery2025-09-03 10:54:23 -0400
GOexpress2025-09-03 14:40:13 +0100
mzR2025-09-02 15:59:24 +0200
islify2025-09-03 12:44:26 +0200
msa2025-09-03 12:22:33 +0200
DMRcaller2025-09-03 11:28:17 +0100

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Newest Packages

Software Packages

spARI Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering
DeeDeeExperiment DeeDeeExperiment: An S4 Class for managing and exploring omics analysis results
AWAggregator Attribute-Weighted Aggregation
miaTime Microbiome Time Series Analysis
linkSet Base Classes for Storing Genomic Link Data
HiCPotts HiCPotts: Hierarchical Modeling to Identify and Correct Genomic Biases in Hi-C
SanityR R/Bioconductor interface to the Sanity model gene expression analysis
SpaceTrooper SpaceTrooper performs Quality Control analysis of Image-Based spatial
batchCorr Within And Between Batch Correction Of LC-MS Metabolomics Data
scafari Analysis of scDNA-seq data

Experiment Data Packages

iModMixData Data for iModMix Package
AWAggregatorData Attribute-Weighted Aggregation Data
CENTREprecomputed Hub package for the precomputed data of CENTRE and example data
muSpaData Multi-sample multi-group spatially resolved transcriptomic data
TENET.ExperimentHub Experiment data for the TENET package
humanHippocampus2024 Access to SRT and snRNA-seq data from spatial_HPC project
eoPredData ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile
ProteinGymR Programmatic access to ProteinGym datasets in R/Bioconductor
CoSIAdata VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee
LegATo LegATo: Longitudinal mEtaGenomic Analysis Toolkit

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Single Package Builder

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Recent Builds
scToppR 2025-09-03T16:36:15
scToppR 2025-09-03T16:18:00
peakCombiner 2025-09-03T13:35:53
peakCombiner 2025-09-03T12:01:24
ChIPDBData 2025-09-03T08:56:49
HiCaptuRe 2025-09-02T12:43:20
HiCaptuRe 2025-09-02T12:02:43
spARI 2025-09-01T04:08:07
spARI 2025-08-30T15:33:49
spARI 2025-08-30T15:19:47
spARI 2025-08-30T15:05:02
spARI 2025-08-30T14:21:22
iscream 2025-08-28T23:16:14
punKEGGer 2025-08-28T16:31:24
peakCombiner 2025-08-28T08:30:08
punKEGGer 2025-08-28T00:05:24
punKEGGer 2025-08-27T16:47:46
punKEGGer 2025-08-27T16:18:14
scGraphVerse 2025-08-27T08:22:25
scGraphVerse 2025-08-27T07:49:19
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Mirror Status

Last updated 2025-09-03T07:04:28-04:00. (Will be updated every 24 hours).

To use a Bioconductor mirror use the R function `chooseBioCmirror()`
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https://bioconductor.statistik.tu-dortmund.de/ yes yes yes
https://ftp.gwdg.de/pub/misc/bioconductor/ yes yes yes
https://bioconductor.riken.jp/ yes yes no
https://free.nchc.org.tw/bioconductor/ yes no no
https://mirrors.tuna.tsinghua.edu.cn/bioconductor/ yes yes yes
https://mirrors.nju.edu.cn/bioconductor/ yes yes yes
https://mirrors.ustc.edu.cn/bioc/ yes no no
https://mirrors.westlake.edu.cn/bioconductor no no no
https://mirrors.zju.edu.cn/bioconductor no yes yes
https://bioconductor.uib.no/ yes yes yes
https://bioconductor.unipi.it no no no
https://cran.asia no yes yes
https://mirror.aarnet.edu.au/pub/bioconductor no no no
https://mirrors.dotsrc.org/bioconductor/ yes yes yes
https://mirror.accum.se/mirror/bioconductor.org/ yes yes yes
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