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BioC 2010

Seattle, WA

2010-07-29 ~ 2010-07-30

Instructors

  • David Fredricks
  • Stephen Friend
  • Jay Shendure
  • Atul Butte
  • Simon Tavare
  • Paul Flicek
  • Lior Pachter
  • Simon Anders
  • Patrick Aboyoun
  • Vincent Carey
  • Marc Carlson
  • Steffen Durinck
  • Greg Finak
  • Nishant Gopalakrishnan
  • Wolfgang Huber
  • Michael Lawrence
  • James MacDonald
  • Davis McCarthy
  • Martin Morgan
  • Herve Pages
  • Mark Robinson
  • Chao-Jen Wong
  • Julie Zhu

Description

This conference highlights current developments within and beyond Bioconductor, an international open source and open development software project for the analysis and comprehension of high-throughput genomic data.

Materials

Morning Talks

Afternoon Labs

Introduction to R

Instructor: Chao-Jen Wong

Install command:

source("http://bioconductor.org/course-packages/install-HTSTrack.R")

Efficient R Programming

Instructor: Martin Morgan

Install command:

source("http://bioconductor.org/course-packages/install-EfficientR.R")

Using limma for differential expression

Instructor: James W. MacDonald

Data mining with biomaRt

Instructor: Steffen Durinck

ChIPpeakAnno Practical

Instructor: Lihua Julie Zhu

Transcript centric annotations and high-throughput sequencing

Instructors: Marc Carlson / Herve Pages

Install command:

source("http://bioconductor.org/course-packages/install-HTSTrack.R")

Bioconductor tools for input and quality assessment of high-throughput sequence data

Instructors: Patrick Aboyoun / Martin Morgan

Install command:

source("http://bioconductor.org/course-packages/install-HTSTrack.R")

Analyzing and Visualizing ChIP-seq Data

Instructor: Michael Lawrence

Analysis of genome-scale count data in Bioconductor

Instructors: Mark Robinson / Davis McCarthy

Using image data for statistical analysis and modeling

Instructor: Wolfgang Huber

Instructor: Vince Carey

Gene centric annotations

Instructor: Marc Carlson

Install command:

source("http://bioconductor.org/course-packages/install-HTSTrack.R")

Analyzing flow cytometry data in Bioconductor

Instructors: Nishant Gopalakrishnan / Chao-Jen Wong

Install command:

source("http://bioconductor.org/course-packages/install-flowTrack.R")

Automated Gating and Metaclustering of High Content Flow Cytometry Data

Instructor: Greg Finak

Install command:

source("http://bioconductor.org/course-packages/install-flowTrack.R")