BioTIP

This is the released version of BioTIP; for the devel version, see BioTIP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Release (3.23)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Felix Yu <felixy at uchicago.edu> and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang. BioTIP: BioTIP: An R package for characterization of Biological Tipping-Point. doi:10.18129/B9.bioc.BioTIP, R package version 1.26.0, https://bioconductor.org/packages/BioTIP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")

BioTIP- an R package for characterization of Biological Tipping-Point	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, RNASeq, Sequencing, Software, Transcription
Version	1.26.0
In Bioconductor since	BioC 3.10 (R-3.6) (7 years)
License	GPL-2
Depends	R (>= 3.6)
Imports	igraph, cluster, psych, stringr, GenomicRanges, MASS, scran, methods, stats, utils, grDevices, graphics, foreach, doParallel
System Requirements
URL	https://github.com/xyang2uchicago/BioTIP

Suggests	knitr, markdown, base, rmarkdown, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioTIP_1.26.0.tar.gz
Windows Binary (x86_64)	BioTIP_1.26.0.zip
macOS Binary (big-sur-x86_64)	BioTIP_1.26.0.tgz
macOS Binary (sonoma-arm64)	BioTIP_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BioTIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioTIP
Package Short Url	https://bioconductor.org/packages/BioTIP/
Package Downloads Report	Download Stats