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GNET2

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GNET2.

All versions

3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Constructing gene regulatory networks from expression data through functional module inference

DOI: 10.18129/B9.bioc.GNET2

Bioconductor version: Release (3.23)

Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.

Author: Chen Chen, Jie Hou and Jianlin Cheng

Maintainer: Chen Chen <ccm3x at mail.missouri.edu>

Citation (from within R, enter citation("GNET2")):

Chen Chen, Jie Hou and Jianlin Cheng. GNET2: Constructing gene regulatory networks from expression data through functional module inference. doi:10.18129/B9.bioc.GNET2, R package version 1.27.0, https://bioconductor.org/packages/GNET2.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GNET2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GNET2")

Details

Package Archives

Follow Installation instructions to use this package in your R session.