MBQN

This is the released version of MBQN; for the devel version, see MBQN.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Mean/Median-balanced quantile normalization

Bioconductor version: Release (3.23)

Modified quantile normalization for omics or other matrix-like data distorted in location and scale.

Author: Eva Brombacher [aut, cre] ORCID: 0000-0002-5488-0985 , Clemens Kreutz [aut, ctb] ORCID: 0000-0002-8796-5766 , Ariane Schad [aut, ctb] ORCID: 0000-0002-1921-8902

Maintainer: Eva Brombacher <brombach at imbi.uni-freiburg.de>

Citation (from within R, enter citation("MBQN")):

Eva Brombacher, Clemens Kreutz, Ariane Schad. MBQN: Mean/Median-balanced quantile normalization. doi:10.18129/B9.bioc.MBQN, R package version 2.24.0, https://bioconductor.org/packages/MBQN.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MBQN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBQN")

MBQN Package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Normalization, Preprocessing, Proteomics, Software
Version	2.24.0
In Bioconductor since	BioC 3.10 (R-3.6) (7 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6)
Imports	stats, graphics, utils, limma (>= 3.30.13), SummarizedExperiment (>= 1.10.0), preprocessCore (>= 1.36.0), BiocFileCache, rappdirs, xml2, RCurl, ggplot2, PairedData, rmarkdown
System Requirements
URL	https://github.com/arianeschad/mbqn
Bug Reports	https://github.com/arianeschad/MBQN/issues

Suggests	knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MBQN_2.24.0.tar.gz
Windows Binary (x86_64)	MBQN_2.24.0.zip
macOS Binary (big-sur-x86_64)	MBQN_2.24.0.tgz
macOS Binary (sonoma-arm64)	MBQN_2.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MBQN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MBQN
Package Short Url	https://bioconductor.org/packages/MBQN/
Package Downloads Report	Download Stats