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TENxBUSData

This is the released version of TENxBUSData; for the devel version, see TENxBUSData.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Single cell dataset from 10x in BUS format


Bioconductor version: Release (3.23)

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

Author: Lambda Moses [aut, cre] ORCID iD ORCID: 0000-0002-7092-9427

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("TENxBUSData")):

Lambda Moses. TENxBUSData: Single cell dataset from 10x in BUS format. doi:10.18129/B9.bioc.TENxBUSData, R package version 1.26.0, https://bioconductor.org/packages/TENxBUSData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBUSData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBUSData")
Downloading BUS data HTML R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData
Version1.26.0
In Bioconductor sinceBioC 3.10 (R-3.6) (7 years)
License BSD_2_clause + file LICENSE
Depends
Imports ExperimentHub, AnnotationHub, utils, BiocGenerics
System Requirements
URLhttps://github.com/BUStools/TENxBUSData
Bug Reportshttps://github.com/BUStools/TENxBUSData/issues
See More
Suggests knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me BUSpaRse
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBUSData_1.26.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/TENxBUSData
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/TENxBUSData
Package Short Url https://bioconductor.org/packages/TENxBUSData/
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