TPP2D

This is the released version of TPP2D; for the devel version, see TPP2D.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

Bioconductor version: Release (3.23)

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.

Author: Nils Kurzawa [aut, cre], Holger Franken [aut], Simon Anders [aut], Wolfgang Huber [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("TPP2D")):

Nils Kurzawa, Holger Franken, Simon Anders, Wolfgang Huber, Mikhail M. Savitski. TPP2D: Detection of ligand-protein interactions from 2D thermal profiles (DLPTP). doi:10.18129/B9.bioc.TPP2D, R package version 1.28.0, https://bioconductor.org/packages/TPP2D.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP2D")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP2D")

Introduction to TPP2D for 2D-TPP analysis	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Proteomics, Software
Version	1.28.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	GPL-3
Depends	R (>= 3.6.0), stats, utils, dplyr, methods
Imports	ggplot2, tidyr, foreach, doParallel, openxlsx, stringr, RCurl, parallel, MASS, BiocParallel, limma
System Requirements
URL	http://bioconductor.org/packages/TPP2D
Bug Reports	https://support.bioconductor.org/

Suggests	knitr, testthat, rmarkdown, BiocStyle
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TPP2D_1.28.0.tar.gz
Windows Binary (x86_64)	TPP2D_1.28.0.zip
macOS Binary (big-sur-x86_64)	TPP2D_1.28.0.tgz
macOS Binary (sonoma-arm64)	TPP2D_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TPP2D
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TPP2D
Package Short Url	https://bioconductor.org/packages/TPP2D/
Package Downloads Report	Download Stats