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calm

This is the released version of calm; for the devel version, see calm.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Covariate Assisted Large-scale Multiple testing

DOI: 10.18129/B9.bioc.calm

Bioconductor version: Release (3.23)

Statistical methods for multiple testing with covariate information. Traditional multiple testing methods only consider a list of test statistics, such as p-values. Our methods incorporate the auxiliary information, such as the lengths of gene coding regions or the minor allele frequencies of SNPs, to improve power.

Author: Kun Liang [aut, cre]

Maintainer: Kun Liang <kun.liang at uwaterloo.ca>

Citation (from within R, enter citation("calm")):

Kun Liang. calm: Covariate Assisted Large-scale Multiple testing. doi:10.18129/B9.bioc.calm, R package version 1.26.0, https://bioconductor.org/packages/calm.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("calm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("calm")

Details

Package Archives

Follow Installation instructions to use this package in your R session.