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cliProfiler

This is the released version of cliProfiler; for the devel version, see cliProfiler.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

A package for the CLIP data visualization


Bioconductor version: Release (3.23)

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Author: You Zhou [aut, cre] ORCID iD ORCID: 0000-0003-1755-9073 , Kathi Zarnack [aut] ORCID iD ORCID: 0000-0003-3527-3378

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("cliProfiler")):

You Zhou, Kathi Zarnack. cliProfiler: A package for the CLIP data visualization. doi:10.18129/B9.bioc.cliProfiler, R package version 1.18.0, https://bioconductor.org/packages/cliProfiler.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cliProfiler")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cliProfiler")
cliProfiler Vignettes HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews ChIPSeq, Epigenetics, Genetics, Sequencing, Software, Visualization
Version1.18.0
In Bioconductor sinceBioC 3.14 (R-4.1) (5 years)
License Artistic-2.0
Depends S4Vectors, methods, R (>= 4.1)
Imports dplyr, rtracklayer, GenomicRanges, ggplot2, BSgenome, Biostrings, utils
System Requirements
URLhttps://github.com/Codezy99/cliProfiler
Bug Reportshttps://github.com/Codezy99/cliProfiler/issues
See More
Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cliProfiler_1.18.0.tar.gz
Windows Binary (x86_64) cliProfiler_1.18.0.zip
macOS Binary (big-sur-x86_64) cliProfiler_1.18.0.tgz
macOS Binary (sonoma-arm64) cliProfiler_1.18.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/cliProfiler
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/cliProfiler
Package Short Url https://bioconductor.org/packages/cliProfiler/
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