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derfinderData

This is the released version of derfinderData; for the devel version, see derfinderData.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Processed BigWigs from BrainSpan for examples


Bioconductor version: Release (3.23)

Processed 22 samples from BrainSpan keeping only the information for chromosome 21. Data is stored in the BigWig format and is used for examples in other packages.

Author: Leonardo Collado-Torres [aut, cre] ORCID iD ORCID: 0000-0003-2140-308X , Andrew Jaffe [aut] ORCID iD ORCID: 0000-0001-6886-1454 , Jeffrey Leek [aut, ths] ORCID iD ORCID: 0000-0002-2873-2671

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("derfinderData")):

Leonardo Collado-Torres, Andrew Jaffe, Jeffrey Leek. derfinderData: Processed BigWigs from BrainSpan for examples. doi:10.18129/B9.bioc.derfinderData, R package version 2.30.0, https://bioconductor.org/packages/derfinderData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("derfinderData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderData")
Introduction to derfinderData HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews ExperimentData, Homo_sapiens_Data, RNASeqData
Version2.30.0
In Bioconductor sinceBioC 3.0 (R-3.1) (12 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports
System Requirements
URLhttps://github.com/leekgroup/derfinderData
Bug Reportshttps://github.com/leekgroup/derfinderData/issues
See More
Suggests sessioninfo, knitr (>= 1.6), RefManageR, rmarkdown (>= 0.3.3), BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me derfinder, derfinderPlot
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package derfinderData_2.30.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/derfinderData
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/derfinderData
Package Short Url https://bioconductor.org/packages/derfinderData/
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