ACME
This is the development version of ACME; for the stable release version, see ACME.
All Bioconductor versions of ACME
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Algorithms for Calculating Microarray Enrichment (ACME)
Bioconductor version: 3.24 · Package version: 2.69.0
ACME (Algorithms for Calculating Microarray Enrichment) is a set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing "enrichment". It does not rely on a specific array technology (although the array should be a "tiling" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is also very fast and can be applied on whole-genome tiling array experiments quite easily with enough memory.
Author: Sean Davis [aut, cre]
Maintainer: Sean Davis <seandavi at gmail.com>
Citation
From within R, enter citation("ACME"):
Sean Davis. ACME: Algorithms for Calculating Microarray Enrichment (ACME). doi:10.18129/B9.bioc.ACME, R package version 2.69.0, https://bioconductor.org/packages/ACME.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ACME")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.69.0 |
| License | GPL (>= 2) |
| URL | https://github.com/seandavi/ACME |
| Bug Reports | https://github.com/seandavi/ACME/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 409 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Microarray, Normalization, Software, Technology |
| Package Short Url | https://bioconductor.org/packages/ACME/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ACME")| ACME | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ACME_2.69.0.tar.gz |
| Windows binary (x86_64) | ACME_2.69.0.zip |
| macOS binary (arm64) | ACME_2.69.0.tgz |
| macOS binary (x86_64) | ACME_2.69.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ACME |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ACME |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.10), Biobase (>= 2.5.5), methods, BiocGenerics
Imports: graphics, stats, utils
Reverse dependencies
Suggests Me (1): oligo