ADaCGH2
Analysis of Big Data from aCGH Experiments using Parallel Computing and ff Objects
Bioconductor version: 3.24 · Package version: 2.53.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ADaCGH2")Details
| Maintainer | Ramon Diaz-Uriarte <rdiaz02@gmail.com> |
| Author | Ramon Diaz-Uriarte [aut, cre] (ORCID: <https://orcid.org/0000-0002-6637-9039>), Oscar M. Rueda [aut], Li Hsu [ctb] (Wavelet-based aCGH smoothing code), Douglas Grove [ctb] (Wavelet-based aCGH smoothing code), Barry Rowlingson [ctb] (Imagemap code), Erez Ben-Yaacov [ctb] (HaarSeg code), Edwin de Jonge [ctb] (Code from ffbase), Jan Wijffels [ctb] (Code from ffbase), Jan van der Laan [ctb] (Code from ffbase) |
| License | GPL (>= 3) |
| URL | https://github.com/rdiaz02/adacgh2 |
| Bug Reports | https://github.com/rdiaz02/adacgh2 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, Microarray, Software, aCGH |
| Package Short Url | https://bioconductor.org/packages/ADaCGH2/ |
Citation
From within R, enter citation("ADaCGH2"):
Ramon Diaz-Uriarte, Oscar M. Rueda. ADaCGH2: Analysis of Big Data from aCGH Experiments using Parallel Computing and ff Objects. doi:10.18129/B9.bioc.ADaCGH2, R package version 2.53.0, https://bioconductor.org/packages/ADaCGH2.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ADaCGH2_2.53.0.tar.gz |
| Windows binary (x86_64) | ADaCGH2_2.53.0.zip |
| macOS binary (arm64) | ADaCGH2_2.53.0.tgz |
| macOS binary (x86_64) | ADaCGH2_2.53.0.tgz |