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This is the development version of BADER; for the stable release version, see BADER.

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Bioconductor version: Development (3.20)

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Author: Andreas Neudecker, Matthias Katzfuss

Maintainer: Andreas Neudecker <a.neudecker at>

Citation (from within R, enter citation("BADER")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Analysing RNA-Seq data with the "BADER" package PDF R Script
Reference Manual PDF


biocViews DifferentialExpression, ImmunoOncology, RNASeq, SAGE, Sequencing, Software
Version 1.43.0
In Bioconductor since BioC 2.13 (R-3.0) (11 years)
License GPL-2
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Source Package BADER_1.43.0.tar.gz
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