BADER
This is the development version of BADER; for the stable release version, see BADER.
All Bioconductor versions of BADER
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13
Bayesian Analysis of Differential Expression in RNA Sequencing Data
Bioconductor version: 3.24 · Package version: 1.51.0
For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.
Author: Andreas Neudecker, Matthias Katzfuss
Maintainer: Andreas Neudecker <a.neudecker at arcor.de>
Citation
From within R, enter citation("BADER"):
Andreas Neudecker, Matthias Katzfuss. BADER: Bayesian Analysis of Differential Expression in RNA Sequencing Data. doi:10.18129/B9.bioc.BADER, R package version 1.51.0, https://bioconductor.org/packages/BADER.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("BADER")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.51.0 |
| License | GPL-2 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.13 (R-3.0) (12 years) |
| Downloads rank | 1602 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, SAGE, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/BADER/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BADER")| Analysing RNA-Seq data with the "BADER" package | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BADER_1.51.0.tar.gz |
| Windows binary (x86_64) | BADER_1.51.0.zip |
| macOS binary (arm64) | BADER_1.51.0.tgz |
| macOS binary (x86_64) | BADER_1.51.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BADER |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BADER |
| Package Downloads Report | Download Stats |
Dependencies
Suggests: pasilla (>= 0.2.10)