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BaseSpaceR

R SDK for BaseSpace RESTful API

Bioconductor version: 3.24 · Package version: 1.57.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

DOI: 10.18129/B9.bioc.BaseSpaceR

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BaseSpaceR")

Details

MaintainerJared O'Connell <joconnell@illumina.com>
AuthorAdrian Alexa
LicenseApache License 2.0
Source branchdevel
Build report Bioconductor build system, r-universe
biocViewsConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Package Short Url https://bioconductor.org/packages/BaseSpaceR/

Citation

From within R, enter citation("BaseSpaceR"):

Adrian Alexa. BaseSpaceR: R SDK for BaseSpace RESTful API. doi:10.18129/B9.bioc.BaseSpaceR, R package version 1.57.0, https://bioconductor.org/packages/BaseSpaceR.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageBaseSpaceR_1.57.0.tar.gz
Windows binary (x86_64)BaseSpaceR_1.57.0.zip
macOS binary (arm64)BaseSpaceR_1.57.0.tgz
macOS binary (x86_64)BaseSpaceR_1.57.0.tgz
Dependencies

Depends: R (>= 2.15.0), RCurl, RJSONIO

Imports: methods

Suggests: RUnit, IRanges, Rsamtools