DOI: 10.18129/B9.bioc.BaseSpaceR    

This is the development version of BaseSpaceR; for the stable release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: Development (3.9)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at>

Citation (from within R, enter citation("BaseSpaceR")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("BaseSpaceR", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script BaseSpaceR
PDF   Reference Manual
Text   NEWS


biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.27.0
In Bioconductor since BioC 2.12 (R-3.0) (6 years)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
Suggests RUnit, IRanges, Rsamtools
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.27.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) BaseSpaceR_1.27.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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