CAMERA
This is the development version of CAMERA; for the stable release version, see CAMERA.
Collection of annotation related methods for mass spectrometry data
Bioconductor version: Development (3.20)
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments
Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
citation("CAMERA")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CAMERA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAMERA")
Atom count expectations with compoundQuantiles | ||
Isotope pattern validation with CAMERA | ||
Molecule Identification with CAMERA | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
Version | 1.61.0 |
In Bioconductor since | BioC 2.4 (R-2.9) (15.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5) |
Imports | methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph |
System Requirements | |
URL | http://msbi.ipb-halle.de/msbi/CAMERA/ |
Bug Reports | https://github.com/sneumann/CAMERA/issues/new |
See More
Suggests | faahKO, RUnit, BiocGenerics, multtest |
Linking To | |
Enhances | Rmpi, snow |
Depends On Me | flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids |
Imports Me | |
Suggests Me | msPurity, RMassBank, mtbls2 |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CAMERA_1.61.0.tar.gz |
Windows Binary | CAMERA_1.61.0.zip |
macOS Binary (x86_64) | CAMERA_1.61.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/CAMERA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CAMERA |
Bioc Package Browser | https://code.bioconductor.org/browse/CAMERA/ |
Package Short Url | https://bioconductor.org/packages/CAMERA/ |
Package Downloads Report | Download Stats |