CAMERA

DOI: 10.18129/B9.bioc.CAMERA  

This is the development version of CAMERA; for the stable release version, see CAMERA.

Collection of annotation related methods for mass spectrometry data

Bioconductor version: Development (3.18)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version	1.57.0
In Bioconductor since	BioC 2.4 (R-2.9) (14 years)
License	GPL (>= 2)
Depends	R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5)
Imports	methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph
LinkingTo
Suggests	faahKO, RUnit, BiocGenerics
SystemRequirements
Enhances	Rmpi, snow
URL	http://msbi.ipb-halle.de/msbi/CAMERA/
BugReports	https://github.com/sneumann/CAMERA/issues/new
Depends On Me	flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids
Imports Me
Suggests Me	cliqueMS, msPurity, mtbls2, RMassBank
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	CAMERA_1.57.0.zip
macOS Binary (x86_64)	CAMERA_1.57.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CAMERA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CAMERA
Bioc Package Browser	https://code.bioconductor.org/browse/CAMERA/
Package Short Url	https://bioconductor.org/packages/CAMERA/
Package Downloads Report	Download Stats