CBNplot
plot bayesian network inferred from gene expression data based on enrichment analysis results
Bioconductor version: 3.24 · Package version: 1.13.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CBNplot")Details
| Maintainer | Noriaki Sato <nori@hgc.jp> |
| Author | Noriaki Sato [cre, aut] |
| License | Artistic-2.0 |
| URL | https://github.com/noriakis/CBNplot |
| Bug Reports | https://github.com/noriakis/CBNplot/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bayesian, GeneExpression, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, Pathways, Reactome, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/CBNplot/ |
Citation
From within R, enter citation("CBNplot"):
Noriaki Sato. CBNplot: plot bayesian network inferred from gene expression data based on enrichment analysis results. doi:10.18129/B9.bioc.CBNplot, R package version 1.13.0, https://bioconductor.org/packages/CBNplot.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CBNplot_1.13.0.tar.gz |
| Windows binary (x86_64) | CBNplot_1.13.0.zip |
| macOS binary (arm64) | CBNplot_1.13.0.tgz |
| macOS binary (x86_64) | CBNplot_1.13.0.tgz |
Dependencies
Depends: R (>= 4.3.0)
Imports: ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork, org.Hs.eg.db, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang
Suggests: knitr, arules, concaveman, ReactomePA, bnviewer, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)