CNORfeeder
Integration of CellNOptR to add missing links
Bioconductor version: 3.24 · Package version: 1.53.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNORfeeder")Details
| Maintainer | Attila Gabor <attila.gabor@uni-heidelberg.de> |
| Author | Federica Eduati [aut, cre] |
| License | GPL-3 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBasedAssays, CellBiology, NetworkInference, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/CNORfeeder/ |
Citation
From within R, enter citation("CNORfeeder"):
Federica Eduati. CNORfeeder: Integration of CellNOptR to add missing links. doi:10.18129/B9.bioc.CNORfeeder, R package version 1.53.0, https://bioconductor.org/packages/CNORfeeder.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CNORfeeder_1.53.0.tar.gz |
| Windows binary (x86_64) | CNORfeeder_1.53.0.zip |
| macOS binary (arm64) | CNORfeeder_1.53.0.tgz |
| macOS binary (x86_64) | CNORfeeder_1.53.0.tgz |
Dependencies
Depends: R (>= 4.0.0), graph
Imports: CellNOptR (>= 1.4.0)
Suggests: minet, Rgraphviz, RUnit, BiocGenerics, igraph
Enhances: MEIGOR