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CRISPRball

This is the development version of CRISPRball; to use it, please install the devel version of Bioconductor.

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering


Bioconductor version: Development (3.19)

A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.

Author: Jared Andrews [aut, cre] , Jacob Steele [ctb]

Maintainer: Jared Andrews <jared.andrews07 at gmail.com>

Citation (from within R, enter citation("CRISPRball")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CRISPRball")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CRISPRball")
CRISPRball Quick Start HTML R Script
Reference Manual PDF

Details

biocViews CRISPR, GUI, QualityControl, ShinyApps, Software, Visualization
Version 0.99.10
In Bioconductor since BioC 3.19 (R-4.4)
License MIT + file LICENSE
Depends R (>= 4.4.0), shinyBS
Imports DT, shiny, grid, ComplexHeatmap, InteractiveComplexHeatmap, graphics, stats, ggplot2, plotly, shinyWidgets, shinycssloaders, shinyjqui, dittoSeq, matrixStats, colourpicker, shinyjs, MAGeCKFlute, circlize, PCAtools, utils, grDevices, htmlwidgets, methods
System Requirements
URL https://github.com/j-andrews7/CRISPRball
Bug Reports https://support.bioconductor.org/
See More
Suggests BiocStyle, msigdbr, depmap, pool, RSQLite, mygene, testthat (>= 3.0.0), knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CRISPRball_0.99.10.tar.gz
Windows Binary
macOS Binary (x86_64) CRISPRball_0.99.10.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CRISPRball
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CRISPRball
Bioc Package Browser https://code.bioconductor.org/browse/CRISPRball/
Package Short Url https://bioconductor.org/packages/CRISPRball/
Package Downloads Report Download Stats