CTDquerier

DOI: 10.18129/B9.bioc.CTDquerier    

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: Development (3.14)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier EscribĂ -Montagut [cre]

Maintainer: Xavier EscribĂ -Montagut <xavier.escriba at isglobal.org>

Citation (from within R, enter citation("CTDquerier")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   LICENSE

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version 2.1.0
In Bioconductor since BioC 3.7 (R-3.5) (3.5 years)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CTDquerier_2.1.0.tar.gz
Windows Binary CTDquerier_2.1.0.zip
macOS 10.13 (High Sierra) CTDquerier_2.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CTDquerier
Package Short Url https://bioconductor.org/packages/CTDquerier/
Package Downloads Report Download Stats

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