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This is the development version of CellMapper; for the stable release version, see CellMapper.

Predict genes expressed selectively in specific cell types

Bioconductor version: Development (3.20)

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Author: Brad Nelms

Maintainer: Brad Nelms <bnelms.research at>

Citation (from within R, enter citation("CellMapper")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

CellMapper Vignette PDF R Script
Reference Manual PDF


biocViews GeneExpression, Microarray, Software
Version 1.31.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends S4Vectors, methods
Imports stats, utils
System Requirements
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Suggests CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub
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Depends On Me CellMapperData
Imports Me
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Follow Installation instructions to use this package in your R session.

Source Package CellMapper_1.31.0.tar.gz
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macOS Binary (x86_64) CellMapper_1.31.0.tgz
macOS Binary (arm64) CellMapper_1.31.0.tgz
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Source Repository (Developer Access) git clone
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