DOI: 10.18129/B9.bioc.ChIPseqR    

This is the development version of ChIPseqR; for the stable release version, see ChIPseqR.

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Development (3.9)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at>

Citation (from within R, enter citation("ChIPseqR")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ChIPseqR", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Introduction to ChIPseqR
PDF   Reference Manual


biocViews ChIPSeq, Infrastructure, Software
Version 1.37.0
In Bioconductor since BioC 2.5 (R-2.10) (9.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, S4Vectors(>= 0.9.25)
Imports Biostrings, fBasics, GenomicRanges, IRanges(>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils
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Follow Installation instructions to use this package in your R session.

Source Package ChIPseqR_1.37.0.tar.gz
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Mac OS X 10.11 (El Capitan) ChIPseqR_1.37.0.tgz
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