Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Bioconductor version: 3.24 · Package version: 1.41.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A pipeline for analysing Capture Hi-C data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Chicago")Details
| Maintainer | Mikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk> |
| Author | Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov |
| License | Artistic-2.0 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Epigenetics, HiC, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/Chicago/ |
Citation
From within R, enter citation("Chicago"):
Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov. Chicago: CHiCAGO: Capture Hi-C Analysis of Genomic Organization. doi:10.18129/B9.bioc.Chicago, R package version 1.41.0, https://bioconductor.org/packages/Chicago.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Chicago_1.41.0.tar.gz |
| Windows binary (x86_64) | Chicago_1.41.0.zip |
| macOS binary (arm64) | Chicago_1.41.0.tgz |
| macOS binary (x86_64) | Chicago_1.41.0.tgz |
Dependencies
Depends: R (>= 3.3.1), data.table
Imports: matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils
Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, GenomeInfoDb, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub