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ChromHeatMap

This is the development version of ChromHeatMap; for the stable release version, see ChromHeatMap.

Heat map plotting by genome coordinate


Bioconductor version: Development (3.19)

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner <tfrayner at gmail.com>

Citation (from within R, enter citation("ChromHeatMap")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ChromHeatMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChromHeatMap")
Plotting expression data with ChromHeatMap PDF R Script
Reference Manual PDF

Details

biocViews Software, Visualization
Version 1.57.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License Artistic-2.0
Depends R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0)
Imports Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChromHeatMap_1.57.0.tar.gz
Windows Binary
macOS Binary (x86_64) ChromHeatMap_1.57.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ChromHeatMap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChromHeatMap
Bioc Package Browser https://code.bioconductor.org/browse/ChromHeatMap/
Package Short Url https://bioconductor.org/packages/ChromHeatMap/
Package Downloads Report Download Stats