CoverageView
This is the development version of CoverageView; for the stable release version, see CoverageView.
Coverage visualization package for R
Bioconductor version: Development (3.20)
This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome
Author: Ernesto Lowy
Maintainer: Ernesto Lowy <ernestolowy at gmail.com>
citation("CoverageView")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CoverageView")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CoverageView")
Easy visualization of the read coverage | R Script | |
Reference Manual |
Details
biocViews | ChIPSeq, ImmunoOncology, RNASeq, Sequencing, Software, Technology, Visualization |
Version | 1.43.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer |
Imports | S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CoverageView_1.43.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | CoverageView_1.43.0.tgz |
macOS Binary (arm64) | CoverageView_1.43.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CoverageView |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CoverageView |
Bioc Package Browser | https://code.bioconductor.org/browse/CoverageView/ |
Package Short Url | https://bioconductor.org/packages/CoverageView/ |
Package Downloads Report | Download Stats |