DelayedMatrixStats

DOI: 10.18129/B9.bioc.DelayedMatrixStats    

This is the development version of DelayedMatrixStats; for the stable release version, see DelayedMatrixStats.

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: Development (3.9)

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey <peter.hickey at gmail.com>

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("DelayedMatrixStats")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")

 

HTML R Script Overview of DelayedMatrixStats
PDF   Reference Manual
Text   LICENSE

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.5.0
License MIT + file LICENSE
Depends DelayedArray(>= 0.7.37)
Imports methods, matrixStats (>= 0.53.1), Matrix, S4Vectors(>= 0.17.5), IRanges, HDF5Array(>= 1.7.10), BiocParallel
LinkingTo
Suggests testthat, knitr, rmarkdown, covr, BiocStyle, microbenchmark, profmem
SystemRequirements
Enhances
URL https://github.com/PeteHaitch/DelayedMatrixStats
BugReports https://github.com/PeteHaitch/DelayedMatrixStats/issues
Depends On Me simpleSingleCell
Imports Me bsseq, dmrseq, minfi, scater, scran
Suggests Me DelayedArray
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DelayedMatrixStats_1.5.0.tar.gz
Windows Binary DelayedMatrixStats_1.5.0.zip
Mac OS X 10.11 (El Capitan) DelayedMatrixStats_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Package Short Url http://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: