DominoEffect
This is the development version of DominoEffect; for the stable release version, see DominoEffect.
Identification and Annotation of Protein Hotspot Residues
Bioconductor version: Development (3.20)
The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.
Author: Marija Buljan and Peter Blattmann
Maintainer: Marija Buljan <marija.buljan.2 at gmail.com>, Peter Blattmann <peter_blattmann at bluewin.ch>
citation("DominoEffect")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("DominoEffect")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DominoEffect")
Vignette for DominoEffect package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Alignment, Proteomics, SequenceMatching, Software, SomaticMutation |
Version | 1.25.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | GPL (>= 3) |
Depends | R (>= 3.5) |
Imports | biomaRt, data.table, utils, stats, Biostrings, pwalign, SummarizedExperiment, VariantAnnotation, AnnotationDbi, GenomeInfoDb, IRanges, GenomicRanges, methods |
System Requirements | |
URL |
See More
Suggests | knitr, testthat, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DominoEffect_1.25.0.tar.gz |
Windows Binary | DominoEffect_1.25.0.zip (64-bit only) |
macOS Binary (x86_64) | DominoEffect_1.25.0.tgz |
macOS Binary (arm64) | DominoEffect_1.25.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DominoEffect |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DominoEffect |
Bioc Package Browser | https://code.bioconductor.org/browse/DominoEffect/ |
Package Short Url | https://bioconductor.org/packages/DominoEffect/ |
Package Downloads Report | Download Stats |