Dune
This is the development version of Dune; for the stable release version, see Dune.
Improving replicability in single-cell RNA-Seq cell type discovery
Bioconductor version: Development (3.20)
Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.
Author: Hector Roux de Bezieux [aut, cre] , Kelly Street [aut]
Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>
Citation (from within R, enter
citation("Dune")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Dune")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Dune")
Dune Vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization |
Version | 1.17.0 |
In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.6) |
Imports | BiocParallel, SummarizedExperiment, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr, aricode |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, testthat (>= 2.1.0) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Dune_1.17.0.tar.gz |
Windows Binary | Dune_1.17.0.zip |
macOS Binary (x86_64) | Dune_1.17.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/Dune |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Dune |
Bioc Package Browser | https://code.bioconductor.org/browse/Dune/ |
Package Short Url | https://bioconductor.org/packages/Dune/ |
Package Downloads Report | Download Stats |