ERSSA
This is the development version of ERSSA; for the stable release version, see ERSSA.
All Bioconductor versions of ERSSA
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8
Empirical RNA-seq Sample Size Analysis
Bioconductor version: 3.24 · Package version: 1.31.0
The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.
Author: Zixuan Shao [aut, cre]
Maintainer: Zixuan Shao <Zixuanshao.zach at gmail.com>
Citation
From within R, enter citation("ERSSA"):
Zixuan Shao. ERSSA: Empirical RNA-seq Sample Size Analysis. doi:10.18129/B9.bioc.ERSSA, R package version 1.31.0, https://bioconductor.org/packages/ERSSA.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("ERSSA")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.31.0 |
| License | GPL-3 | file LICENSE |
| URL | https://github.com/zshao1/ERSSA |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| Downloads rank | 1170 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, MultipleComparison, QualityControl, RNASeq, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/ERSSA/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ERSSA")| ERSSA Package Introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ERSSA_1.31.0.tar.gz |
| Windows binary (x86_64) | ERSSA_1.31.0.zip |
| macOS binary (arm64) | ERSSA_1.31.0.tgz |
| macOS binary (x86_64) | ERSSA_1.31.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ERSSA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ERSSA |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0.0)
Imports: edgeR (>= 3.23.3), DESeq2 (>= 1.21.16), ggplot2 (>= 3.0.0), RColorBrewer (>= 1.1-2), plyr (>= 1.8.4), BiocParallel (>= 1.15.8), apeglm (>= 1.4.2), grDevices, stats, utils