EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Bioconductor version: 3.24 · Package version: 1.31.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EnhancedVolcano")Details
| Maintainer | Jared Andrews <jared.andrews07@gmail.com> |
| Author | Kevin Blighe [aut], Jared Andrews [cre, ctb] (ORCID: <https://orcid.org/0000-0002-0780-6248>), Sharmila Rana [aut], Emir Turkes [ctb], Benjamin Ostendorf [ctb], Andrea Grioni [ctb], Myles Lewis [aut] |
| License | GPL-3 |
| URL | https://github.com/kevinblighe/EnhancedVolcano |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/EnhancedVolcano/ |
Citation
From within R, enter citation("EnhancedVolcano"):
Kevin Blighe, Sharmila Rana, Myles Lewis. EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and labeling. doi:10.18129/B9.bioc.EnhancedVolcano, R package version 1.31.0, https://bioconductor.org/packages/EnhancedVolcano.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | EnhancedVolcano_1.31.0.tar.gz |
| Windows binary (x86_64) | EnhancedVolcano_1.31.0.zip |
| macOS binary (arm64) | EnhancedVolcano_1.31.0.tgz |
| macOS binary (x86_64) | EnhancedVolcano_1.31.0.tgz |
Dependencies
Imports: methods, scales, grid, grDevices
Suggests: RUnit, ggrastr, BiocGenerics, knitr, DESeq2, pasilla, airway, org.Hs.eg.db, gridExtra, magrittr, rmarkdown
Reverse dependencies
Imports Me (3): chevreulShiny, goatea, MetaProViz
Suggests Me (5): ExpHunterSuite, henna, rliger, VISTA, xCell2