Fancy
Frequency and Nonlinear Correlation Hybrid Network Inference
Bioconductor version: 3.24 · Package version: 0.99.4
Infers microbial co-abundance networks by combining mutual information (via MRNET) and distance correlation into a single hybrid edge score. Bootstrap resampling provides frequency-based confidence, and a weighted scoring function ranks edges for downstream module analysis. Designed for metagenome-assembled genome (MAG) count tables.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Fancy")Details
| Maintainer | Wanxin Lai <wanxin.graceca@gmail.com> |
| Author | Wanxin Lai [aut, cre] (ORCID: <https://orcid.org/0009-0000-1607-2453>) |
| License | GPL (>= 3) |
| URL | https://github.com/wala-github/Fancy |
| Bug Reports | https://github.com/wala-github/Fancy/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Metagenomics, Microbiome, Network, NetworkInference, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/Fancy/ |
Citation
From within R, enter citation("Fancy"):
Wanxin Lai. Fancy: Frequency and Nonlinear Correlation Hybrid Network Inference. doi:10.18129/B9.bioc.Fancy, R package version 0.99.4, https://bioconductor.org/packages/Fancy.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Fancy_0.99.4.tar.gz |
| Windows binary (x86_64) | Fancy_0.99.4.zip |
| macOS binary (arm64) | Fancy_0.99.4.tgz |
| macOS binary (x86_64) | Fancy_0.99.4.tgz |