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This is the development version of GEOexplorer; for the stable release version, see GEOexplorer.

GEOexplorer: a webserver for gene expression analysis and visualisation

Bioconductor version: Development (3.20)

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //

Author: Guy Hunt [aut, cre] , Rafael Henkin [ctb, ths] , Alfredo Iacoangeli [ctb, ths] , Fabrizio Smeraldi [ctb, ths] , Michael Barnes [ctb, ths]

Maintainer: Guy Hunt <guy.hunt at>

Citation (from within R, enter citation("GEOexplorer")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

GEOexplorer HTML R Script
Reference Manual PDF


biocViews DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 1.11.0
In Bioconductor since BioC 3.14 (R-4.1) (2.5 years)
License GPL-3
Depends shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0)
Imports DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car
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Suggests rmarkdown, usethis, testthat (>= 3.0.0)
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Follow Installation instructions to use this package in your R session.

Source Package GEOexplorer_1.11.0.tar.gz
Windows Binary
macOS Binary (x86_64) GEOexplorer_1.11.0.tgz
macOS Binary (arm64) GEOexplorer_1.11.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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