GSALightning
This is the development version of GSALightning; for the stable release version, see GSALightning.
All Bioconductor versions of GSALightning
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3
Fast Permutation-based Gene Set Analysis
Bioconductor version: 3.24 · Package version: 1.41.0
GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
Author: Billy Heung Wing Chang
Maintainer: Billy Heung Wing Chang <billyheungwing at gmail.com>
Citation
From within R, enter citation("GSALightning"):
Billy Heung Wing Chang. GSALightning: Fast Permutation-based Gene Set Analysis. doi:10.18129/B9.bioc.GSALightning, R package version 1.41.0, https://bioconductor.org/packages/GSALightning.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("GSALightning")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.41.0 |
| License | GPL (>=2) |
| URL | https://github.com/billyhw/GSALightning |
| Bug Reports | https://github.com/billyhw/GSALightning/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.3 (R-3.3) (10 years) |
| Downloads rank | 1679 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | BiologicalQuestion, DifferentialExpression, GeneExpression, GeneSetEnrichment, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/GSALightning/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSALightning")| GSALightning: Ultra-fast Permutation-based Gene Set Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GSALightning_1.41.0.tar.gz |
| Windows binary (x86_64) | GSALightning_1.41.0.zip |
| macOS binary (arm64) | GSALightning_1.41.0.tgz |
| macOS binary (x86_64) | GSALightning_1.41.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSALightning |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSALightning |
| Package Downloads Report | Download Stats |